2009 CIBM Annual Retreat

Friday, October 16, 2009

The Pyle Center

9:00 a.m. Continental breakfast, Room 313

9:30 Welcome remarks; Introduction to CIBM Training Program

9:45-10:45 Keynote Speaker: David Lipman, MD (Director, National Center for Biotechnology), Computing Discoveries in Biology at NCBI

10:45-11:00 Mid Morning Beverages

11:00-12:00 Poster session I, Room 309

12:00-1:15 Lunch, AT&T Lounge

1:15-2:15 Sangtae Kim, PhD (Executive Director, Morgridge Institute for Research, Madison WI), Strategic Vision for the Morgridge Institute for Research

2:15-3:30 Poster Session II (refreshments during the break), Room 309

3:30-4:30 UW Alum Speaker: Vasant Honavar, PhD (Professor of Computer Science; Bioinformatics and Computational Biology Program; Center for Computational Intelligence, Learning, and Discovery, Iowa State University), From Sequence Annotation to Network Alignment

5:00 p.m. End of room reservation

PAST RETREATS

Seventh Annual CIBM Retreat

Friday, October 17, 2008

The Pyle Center

9:00 a.m. Continental breakfast, Room 313

9:30 Welcome remarks; Introduction to CIBM Training Program

9:45-10:45 UW Alum Speaker Christopher Rao, PhD, Assistant Professor, Department of Chemical & Biomedical Engineering, University of Illinois at Urbana-Champaign, Dynamics and Regulation of Bacterial Gene Circuits

10:45-11:00 Mid Morning Beverages

11:00-12:00 Poster session I

12:00-1:15 Lunch

1:15-2:15 Keynote Speaker, Giulio Tononi, MD, PhD, Professor, Department of Psychiatry, University of Wisconsin-Madison, An Integrated Information Theory of Consciousness

2:15-3:30 Poster Session II (refreshments during the break)

3:30-4:30 UW Faculty Speaker, Fred Blattner, PhD, Oliver Smithies Professor of Genetics, University of Wisconsin-Madison, I Was Writing a Bioinformatics Proram When JFK Was Assassinated

5:00 p.m. End of room reservation

Sixth Annual CIBM Retreat

Friday, October 19th, 2007

Pyle Center, 702 Langdon St., Madison WI

Schedule 2007
9:00 a.m. Continental breakfast, Room 313/309

9:30 Welcome remarks; Introduction to CIBM Training Program

9:45-10:45 Justin Starren, MD, PhD (Director, Biomedical Informatics Research Center, Marshfield Clinic Research Foundation; Visiting Faculty, Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison), "Clinical Informatics Outside the Clinic"

10:45-11:00 Mid Morning Beverages

11:00-12:00 Poster session I

12:00-1:15 Lunch

1:15-2:15 Shankar Subramaniam, PhD, (Professor of Bioengineering and Chemistry and Biochemistry, University of Calilfornia, San Diego), "The Fat Story – Prometheus Revisited!"

2:15-3:30 Poster Session II (refreshments during the break)

3:30-4:30 UW and CIBM Alumn Speaker
Joseph Bockhorst, Ph.D., Assistant Professor, Department of Electrical Engineering and Computer Science, University of Wisconsin-Milwaukee, "Learning the Structure of Probabilistic Sequence Models - Applications to Vaccine Design"

5:00 p.m. End of room reservation

 

The fifth annual CIBM Program Retreat was held October 13th, 2006 in the Pyle Center

Schedule 2006
9:00 a.m. Continental breakfast, Room 313/309

9:30 Welcome remarks; Introduction to CIBM Training Program

9:45-10:45 Jill Mesirov, PhD, Director, Computational Biology and Bioinformatics, Broad Institute, "Gene Expression Analysis: A Knowledge-Based Approach"

10:45-11:00 Mid Morning Beverages

11:00-12:00 Poster session I

12:00-1:15 Lunch

1:15-2:15 Michael Newton, PhD, Professor of Biostatistics and Medical Informatics and of Statistics, UW-Madison, "Problems And Solutions In Gene Set Enrichment Analysis"

2:15-2:30 Afternoon break and refreshments

2:30 - 4:00 Poster session II
Refreshments during poster session

4:00-5:00 UW Alumnae Speaker
Lingchong You, Ph.D. , Assistant Professor, Department of Biomedical Engineering
Duke University, "Biology by Design: Reduction and Synthesis of Cellular Networks"

5:00 p.m. End of room reservation

Schedule 2005
9:00 a.m. Continental breakfast, Room 325/326

9:30 Welcome remarks; Introduction to CIBM Training Program

9:45-10:45 Frederick W. Kron, M.D., Assistant Clinical Professor, Department of Family Medicine, UW-Madison

10:45-11:00 Mid Morning Beverages

11:00-12:00 Poster session I

12:00-1:15 Lunch, Alumni Lounge

1:15-2:15 CIBM Distinguished Lecturer
Daphne Koller, Ph.D.Associate Professor, Computer Science Department,
Stanford University
Modeling Conservation and Variation in Regulatory Networks

2:15-3:30 Poster session II
Refreshments during poster session

3:30-4:30 UW Alumna Speaker
Kristin P. Bennett, Ph.D.
Professor, Department of Mathematical Science
Rensselaer Polytechnic Institute
http://www.rpi.edu/~bennek/

5:00 p.m. End of room reservation

Oct. 15, 2004 - Third Annual CIBM Program Retreat

SCHEDULE

9:00 a.m. Continental breakfast, in room 325/326

9:30 Welcome remarks; Introduction to CIBM Training Program

9:45-10:45 Lloyd Smith, Ph.D. (John D. MacArthur Professor, Department of Chemistry; Director, Genome Center of Wisconsin, University of Wisconsin-Madison): DNA Computing on Surface, announcement.
10:45-11:00 Mid Morning Beverages
11:00-12:00 Poster session I
12:00-1:15 Lunch, Alumni Lounge
1:15-2:15 CIBM Distinguished Lecturer
Michael Waterman, Ph.D. (University Professor, Departments of Biological Sciences, Mathematics, and Computer Science, University of Southern California): Algorithms for Haplotype Block Partition, announcement.
2:15-3:30 Poster session II
Refreshments during poster session
3:30-4:30 Michael E. Wall, Ph.D. (Computer and Computational Sciences Division and Bioscience Division, Los Alamos National Laboratory: Design Principles of Genetic Regulatory Networks, announcement.
5:00 p.m. End of room reservation

2003 Annual Retreat:

Friday, October 3rd, 2003
Pyle Center, Room 325/326
9:00 a.m. to 5:00 p.m.

The second annual retreat of the Computation and Informatics in Biology and Medicine Training Program, was held in the Pyle Center Friday, October 3rd, 2003.

9:00 a.m. Continental breakfast, in room 325/326

9:30 Welcome remarks; Introduction to CIBM Training Program

9:45-10:45 Patricia F. Brennan, Ph.D. (Professor, Departments of Biostatistics and Medical Informatics, Nursing, and Industrial Engineering, University of Wisconsin-Madison): Linking Lay People to the Professional Literature - An Application of Natural Language Processing to Free-Text E-Mail (view printable announcement: in pdf format, announcement, download reader)

10:45-11:00 Mid Morning Beverages

11:00-12:00 Poster session I (odds)

12:00-1:15 Lunch, Main Dining Room

1:15-2:15 John Yin, Ph.D. (Associate Professor, Department of Chemical and Biological Engineering, University of Wisconsin-Madison): From Genome to Organism: A Virus-world View (view abstract: in pdf format, abstract, download reader)

2:15-3:30 Poster session II (evens) Refreshments during poster session

3:30-4:30 UW Bioinformatics Alumnus Lecture. Michael Giddings, Ph.D. (Assistant Professor, Microbiology & Immunology; Biomedical Engineering, University of North Carolina-Chapel Hill):Genome Analysis by Proteomic Methods and Genome Fingerprint Scanning (view abstract: in pdf format, abstract, download reader)

5:00 p.m. End of room reservation

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File last modified: September 29 , 2003
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